Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs113674713 chr5:169009748 G/A 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs114030816 chr3:53267709 G/C 3.61E-8 502 21.83 27.37 10.97 KM Plot
LGG rs114068835 chr5:168980740 A/T 1.58E-8 507 21.87 24.07 6.83 KM Plot
LGG rs11421297 chr6:88252367 T/TA 5.05E-6 505 22.58 24.5 4.08 KM Plot
LGG rs114319783 chr5:169052278 T/C 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs1144371 chr13:78282193 A/G 8.36E-6 509 22.6 24.13 14.93 KM Plot
LGG rs114534725 chr8:6186191 G/C 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs11465246 chr5:156998374 G/T 7.28E-6 496 21.7 24.05 8.03 KM Plot
LGG rs114665819 chr8:6184530 C/T 2.29E-5 497 21.85 24.07 7.72 KM Plot
LGG rs114801506 chr14:24420260 C/T 4.1E-5 504 23.63 21.45 15.53 KM Plot
LGG rs114826154 chr14:102190818 A/C 1.59E-14 501 21.7 28.72 5.4 KM Plot
LGG rs115046317 chr5:168979823 G/C 1.43E-8 509 21.87 24.07 6.83 KM Plot
LGG rs115162500 chr1:22128858 G/A 1.59E-6 504 21.7 26.27 14.6 KM Plot
LGG rs11540640 chr2:74383630 G/A 2.73E-5 505 21.83 25.13 11.57 KM Plot
LGG rs115467923 chr5:157031539 G/A 8.45E-6 487 21.7 25.13 8.03 KM Plot